PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001794.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 405aa    MW: 43662.5 Da    PI: 5.2449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001794.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-193586156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                             +++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a+++a++ l+g+
  Itr_sc001794.1_g00009.1 35 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDQAARTLRGA 86
                             6799******.7*********....4456*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.49E-313593No hitNo description
PfamPF008475.1E-143585IPR001471AP2/ERF domain
PROSITE profilePS5103220.5083693IPR001471AP2/ERF domain
SMARTSM003801.5E-363699IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-203693IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-293693IPR001471AP2/ERF domain
PRINTSPR003677.8E-83748IPR001471AP2/ERF domain
PRINTSPR003677.8E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKQTLPPPPQ SQEQLPPLPS DVIRTRRKPS SRGHPRFVGV RQRPSGRWVA EIKDSLQKVR  60
LWLGTFDTAE EAARAYDQAA RTLRGANART NFDLPESDSG EGGCSLLPGN LEPFSFEDAC  120
RSEEPDGGLV GALKAKLFSS ESSRLFIQSN ASNATPSTIA KPQDENINNN LKNNDGGDKI  180
SSMAAAAAQF SSTNGLIDAT STSYLPNVVR AEKPKFNLDH YTPQTEQNTN IHHNYNIDHI  240
SLLTPSDHPM NTPTWLNPSH TIAATSNMMT QWPNDQTVGW IDTLQTGRGG HEMEPCSWLP  300
ISGLSSSYPE NSLDILNTPP MIMSQIGGGG ALPAETQIVQ CENEYWNSSS AAAAAAAVAG  360
ASGGAWDPFM LSSVLGVATG EYVGVGGPRW PREGKKWGFG MGEDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1337101670ATERF1
3gcc_A6e-1337101670ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11